ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: zinc finger, CCHC domain containing 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134744 ZCCHC11 9606 - 1:52408282-52553487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257177 ZCCHC11-005 52423275-52552982 protein_coding
  ENST00000355809 ZCCHC11-003 52514778-52552994 protein_coding
  ENST00000371541 ZCCHC11-002 52462178-52525930 processed_transcript
  ENST00000371544 ZCCHC11-001 52423275-52553100 protein_coding
  ENST00000466440 ZCCHC11-006 52423403-52434670 retained_intron
  ENST00000469810 ZCCHC11-004 52433089-52462912 retained_intron
  ENST00000470212 ZCCHC11-008 52431288-52437255 retained_intron
  ENST00000470626 ZCCHC11-013 52526020-52553085 protein_coding
  ENST00000471623 ZCCHC11-015 52423636-52431081 protein_coding
  ENST00000473856 ZCCHC11-014 52477738-52553069 nonsense_mediated_decay
  ENST00000474453 ZCCHC11-016 52431247-52446650 protein_coding
  ENST00000481133 ZCCHC11-011 52464963-52468490 retained_intron
  ENST00000481528 ZCCHC11-009 52460957-52461716 retained_intron
  ENST00000484723 ZCCHC11-017 52446400-52553458 protein_coding
  ENST00000494469 ZCCHC11-007 52423563-52431438 protein_coding
  ENST00000497120 ZCCHC11-010 52446265-52462090 retained_intron
  ENST00000524582 ZCCHC11-018 52526050-52553487 protein_coding
  ENST00000527941 ZCCHC11-020 52408285-52431112 nonsense_mediated_decay
  ENST00000528457 ZCCHC11-021 52408282-52431227 protein_coding
  ENST00000528642 ZCCHC11-012 52445787-52553082 protein_coding
  ENST00000531722 ZCCHC11-019 52431126-52446628 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000257177ENST00000355809ENST00000371541ENST00000371544ENST00000466440ENST00000474453ENST00000484723ENST00000494469ENST00000524582ENST00000528457ENST00000528642ENST00000531722
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000257177 N/A 1.717±0.66 2.302±0.00 N/A 2.301±1.84
ENST00000355809 0.608±0.00 N/A N/A N/A N/A
ENST00000371541 N/A 3.036±0.34 N/A N/A 1.366±0.91
ENST00000371544 N/A 1.008±0.50 N/A N/A 1.608±0.79
ENST00000466440 N/A N/A N/A N/A 0.722±0.09
ENST00000474453 N/A 2.766±0.02 N/A N/A N/A
ENST00000484723 N/A 1.492±0.71 N/A N/A N/A
ENST00000494469 5.735±0.69 4.653±0.00 26.631±0.00 N/A 5.730±0.00
ENST00000524582 N/A N/A N/A N/A 4.825±0.00
ENST00000528457 N/A N/A 34.172±0.00 N/A N/A
ENST00000528642 N/A 2.024±1.39 N/A 3.154±0.00 1.061±0.48
ENST00000531722 N/A 3.798±0.97 N/A N/A N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001816 IEA cytokine production
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0010586 ISS miRNA metabolic process
GO:0010587 IMP miRNA catabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0019827 IMP stem cell maintenance
GO:0031054 IMP pre-miRNA processing
GO:0031123 IDA RNA 3'-end processing
GO:0031664 IEA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0032755 IEA positive regulation of interleukin-6 production
GO:0044822 IDA poly(A) RNA binding
GO:0050265 IDA RNA uridylyltransferase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070102 IEA interleukin-6-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070271 zcchc11 protein_coding Danio_rerio
ENSMUSG00000034610 Zcchc11 protein_coding Mus_musculus

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