ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034610 Zcchc11 10090 + 4:108459426-108559421 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043368 Zcchc11-201 108459426-108559415 protein_coding
  ENSMUST00000097925 Zcchc11-001 108460010-108559421 protein_coding
  ENSMUST00000106673 Zcchc11-005 108459426-108479153 protein_coding
  ENSMUST00000127602 Zcchc11-010 108549085-108555435 processed_transcript
  ENSMUST00000128042 Zcchc11-002 108555736-108559054 protein_coding
  ENSMUST00000138088 Zcchc11-008 108542418-108543226 processed_transcript
  ENSMUST00000138809 Zcchc11-006 108526474-108529306 processed_transcript
  ENSMUST00000145590 Zcchc11-003 108555452-108559415 processed_transcript
  ENSMUST00000151349 Zcchc11-009 108542266-108548286 processed_transcript
  ENSMUST00000153916 Zcchc11-007 108542365-108543233 processed_transcript
  ENSMUST00000155068 Zcchc11-004 108479081-108524350 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000043368ENSMUST00000097925ENSMUST00000145590
Transcript ID C166 Tie2+ EC mES
ENSMUST00000043368 5.234±1.60 4.152±2.07 8.002±4.15
ENSMUST00000097925 3.232±0.83 2.225±0.33 6.110±2.31
ENSMUST00000145590 N/A N/A 2.969±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0001VF CIL_0001VF_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA:ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010586 IMP miRNA metabolic process
GO:0010587 ISS miRNA catabolic process
GO:0016779 IEA nucleotidyltransferase activity
GO:0019827 ISS stem cell maintenance
GO:0031054 ISS pre-miRNA processing
GO:0031123 IDA RNA 3'-end processing
GO:0031664 IDA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0032755 IMP positive regulation of interleukin-6 production
GO:0044822 IEA poly(A) RNA binding
GO:0050265 IDA RNA uridylyltransferase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070102 IMP interleukin-6-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070271 zcchc11 protein_coding Danio_rerio
ENSG00000134744 ZCCHC11 zinc finger, CCHC domain containing 11 protein_coding Homo_sapiens

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