ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: high mobility group nucleosome binding domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205581 HMGN1 9606 - 21:39342315-39349647 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288344 HMGN1-004 39342315-39348991 nonsense_mediated_decay
  ENST00000380747 HMGN1-013 39342879-39349647 protein_coding
  ENST00000380748 HMGN1-018 39342692-39349053 protein_coding
  ENST00000380749 HMGN1-001 39342315-39349200 protein_coding
  ENST00000419378 HMGN1-015 39342788-39349040 nonsense_mediated_decay
  ENST00000431390 HMGN1-002 39342315-39349140 nonsense_mediated_decay
  ENST00000436324 HMGN1-009 39342646-39349088 nonsense_mediated_decay
  ENST00000443046 HMGN1-017 39343009-39349054 nonsense_mediated_decay
  ENST00000463631 HMGN1-005 39348065-39349054 retained_intron
  ENST00000464078 HMGN1-007 39343137-39349054 retained_intron
  ENST00000471260 HMGN1-020 39347492-39348620 processed_transcript
  ENST00000479586 HMGN1-019 39347336-39349015 processed_transcript
  ENST00000482192 HMGN1-008 39342804-39348623 processed_transcript
  ENST00000482733 HMGN1-014 39347995-39349020 retained_intron
  ENST00000485550 HMGN1-021 39342909-39348597 processed_transcript
  ENST00000486741 HMGN1-006 39342315-39349099 retained_intron
  ENST00000489072 HMGN1-012 39342800-39348862 processed_transcript
  ENST00000490032 HMGN1-010 39342978-39348339 processed_transcript
  ENST00000491183 HMGN1-016 39347147-39349067 processed_transcript
  ENST00000492280 HMGN1-003 39342315-39349344 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000288344ENST00000380747ENST00000380749ENST00000486741ENST00000492280
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000288344 41.167±0.00 N/A 46.889±0.00 N/A N/A
ENST00000380747 N/A N/A N/A N/A 38.146±10.12
ENST00000380749 41.521±28.43 41.623±17.46 23.687±0.00 53.006±0.00 82.417±45.36
ENST00000486741 N/A 4.482±0.52 N/A 9.868±0.00 6.131±3.72
ENST00000492280 N/A N/A N/A N/A 7.527±6.82

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004KG CIL_0004KG_0001 CGP
CIL_0003GM CIL_0003GM_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000720 IEA pyrimidine dimer repair by nucleotide-excision repair
GO:0000785 IEA chromatin
GO:0003677 TAS DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006283 IEA transcription-coupled nucleotide-excision repair
GO:0006325 IEA chromatin organization
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0010224 IEA response to UV-B
GO:0010225 IEA response to UV-C
GO:0031492 IEA nucleosomal DNA binding
GO:0032786 TAS positive regulation of DNA-templated transcription, elongation
GO:0040034 IEA regulation of development, heterochronic
GO:0048597 IEA post-embryonic camera-type eye morphogenesis
GO:0050678 IEA regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040681 Hmgn1 protein_coding Mus_musculus

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