ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004661 Arid3b 10090 - 9:57790353-57836793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004780 Arid3b-201 57790513-57834236 protein_coding
  ENSMUST00000098686 Arid3b-002 57794687-57836793 protein_coding
  ENSMUST00000114165 Arid3b-005 57792423-57836478 nonsense_mediated_decay
  ENSMUST00000164010 Arid3b-006 57790353-57836706 protein_coding
  ENSMUST00000164035 Arid3b-003 57794686-57836761 nonsense_mediated_decay
  ENSMUST00000167670 Arid3b-004 57808130-57836770 retained_intron
  ENSMUST00000169563 Arid3b-008 57790359-57791648 processed_transcript
  ENSMUST00000170477 Arid3b-007 57798150-57820627 protein_coding
  ENSMUST00000171444 Arid3b-001 57790356-57836708 protein_coding
  ENSMUST00000171949 Arid3b-009 57792161-57796221 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000004780ENSMUST00000098686ENSMUST00000169563ENSMUST00000171444
Transcript ID C166 Tie2+ EC mES
ENSMUST00000004780 0.919±0.22 0.699±0.36 N/A
ENSMUST00000098686 0.781±0.12 0.581±0.01 N/A
ENSMUST00000169563 N/A N/A 40.858±0.00
ENSMUST00000171444 0.450±0.00 N/A 2.003±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007UD CIL_0007UD_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000179361 ARID3B AT rich interactive domain 3B (BRIGHT-like) protein_coding Homo_sapiens

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