ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009585 Apobec3 10090 + 15:79891659-79915906 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023054 Apobec3-004 79895023-79907906 protein_coding
  ENSMUST00000109620 Apobec3-201 79892408-79908429 protein_coding
  ENSMUST00000165537 Apobec3-202 79892408-79908429 protein_coding
  ENSMUST00000175714 Apobec3-001 79892403-79907918 protein_coding
  ENSMUST00000175752 Apobec3-002 79892448-79908086 protein_coding
  ENSMUST00000175801 Apobec3-009 79897823-79905918 retained_intron
  ENSMUST00000175827 Apobec3-008 79906123-79907091 retained_intron
  ENSMUST00000175849 Apobec3-010 79892449-79896028 retained_intron
  ENSMUST00000176325 Apobec3-006 79892449-79908436 protein_coding
  ENSMUST00000176644 Apobec3-003 79900202-79907920 retained_intron
  ENSMUST00000176823 Apobec3-013 79892058-79897764 processed_transcript
  ENSMUST00000176868 Apobec3-012 79892411-79905492 nonsense_mediated_decay
  ENSMUST00000176904 Apobec3-011 79895261-79898185 protein_coding
  ENSMUST00000177006 Apobec3-005 79892442-79907369 nonsense_mediated_decay
  ENSMUST00000177098 Apobec3-007 79892455-79915906 nonsense_mediated_decay
  ENSMUST00000177350 Apobec3-015 79891659-79905547 protein_coding
  ENSMUST00000177483 Apobec3-014 79891694-79905600 protein_coding

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000109620ENSMUST00000165537ENSMUST00000175714ENSMUST00000175752ENSMUST00000176325ENSMUST00000177006ENSMUST00000177098
Transcript ID C166 Tie2+ EC mES
ENSMUST00000109620 5.833±0.48 N/A 0.822±0.02
ENSMUST00000165537 N/A 3.020±1.20 N/A
ENSMUST00000175714 17.096±1.15 2.479±0.47 1.738±0.09
ENSMUST00000175752 N/A 1.128±0.00 3.052±1.95
ENSMUST00000176325 N/A 2.537±0.37 N/A
ENSMUST00000177006 N/A 1.499±0.00 N/A
ENSMUST00000177098 N/A 1.087±0.08 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0010529 IDA negative regulation of transposition
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0045071 IDA negative regulation of viral genome replication
GO:0045087 IEA innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000128394 APOBEC3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F protein_coding Homo_sapiens
ENSG00000179750 APOBEC3B apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein_coding Homo_sapiens
ENSG00000239713 APOBEC3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G protein_coding Homo_sapiens
ENSG00000243811 APOBEC3D apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D protein_coding Homo_sapiens
ENSG00000244509 APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C protein_coding Homo_sapiens

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