ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026121 Sema4c 10090 - 1:36548639-36558349 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114991 Sema4c-001 36548642-36558349 protein_coding
  ENSMUST00000191642 Sema4c-006 36548642-36557526 protein_coding
  ENSMUST00000191677 Sema4c-003 36548639-36558349 protein_coding
  ENSMUST00000191785 Sema4c-008 36551726-36552894 retained_intron
  ENSMUST00000193382 Sema4c-005 36554400-36557534 protein_coding
  ENSMUST00000195160 Sema4c-007 36553224-36554230 retained_intron
  ENSMUST00000195339 Sema4c-004 36555932-36558250 protein_coding
  ENSMUST00000195620 Sema4c-002 36548642-36557557 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000114991ENSMUST00000191677ENSMUST00000195620
Transcript ID C166 Tie2+ EC mES
ENSMUST00000114991 4.722±1.05 9.016±0.89 N/A
ENSMUST00000191677 2.402±0.00 5.596±0.14 1.686±0.40
ENSMUST00000195620 8.097±3.44 9.596±2.34 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0002UD CIL_0002UD_0002 CGP
CIL_0002UE CIL_0002UE_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0014069 IDA postsynaptic density
GO:0016021 IEA integral component of membrane
GO:0021535 IMP cell migration in hindbrain
GO:0021549 IMP cerebellum development
GO:0030054 IEA cell junction
GO:0030672 IDA synaptic vesicle membrane
GO:0032874 ISS positive regulation of stress-activated MAPK cascade
GO:0042692 IMP muscle cell differentiation
GO:0045211 IEA postsynaptic membrane
GO:0071526 IMP semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079611 sema4c protein_coding Danio_rerio
ENSG00000168758 SEMA4C sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C protein_coding Homo_sapiens

Loading