ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026728 Vim 10090 + 2:13573927-13582826 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028062 Vim-001 13573952-13582826 protein_coding
  ENSMUST00000141365 Vim-003 13573927-13574833 protein_coding
  ENSMUST00000148248 Vim-004 13579369-13582478 retained_intron
  ENSMUST00000155605 Vim-002 13574322-13578604 retained_intron
  ENSMUST00000191615 Vim-005 13574523-13577448 retained_intron
  ENSMUST00000193675 Vim-006 13574281-13582825 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000028062ENSMUST00000148248ENSMUST00000155605ENSMUST00000193675
Transcript ID C166 Tie2+ EC mES
ENSMUST00000028062 184.857±0.00 516.505±62.61 712.208±78.00
ENSMUST00000148248 N/A 194.560±0.00 N/A
ENSMUST00000155605 201.427±23.90 N/A N/A
ENSMUST00000193675 148.746±32.02 22.947±19.62 360.605±57.36

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0005AO CIL_0005AO_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0003725 ISO double-stranded RNA binding
GO:0005198 IMP structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005212 IDA structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005777 IEA peroxisome
GO:0005829 IEA cytosol
GO:0005856 ISO cytoskeleton
GO:0005882 IDA intermediate filament
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0008022 IEA protein C-terminus binding
GO:0010628 IMP positive regulation of gene expression
GO:0010977 IGI negative regulation of neuron projection development
GO:0014002 IGI astrocyte development
GO:0031252 IDA cell leading edge
GO:0042802 IEA identical protein binding
GO:0042995 IDA cell projection
GO:0043005 IDA neuron projection
GO:0045098 TAS type III intermediate filament
GO:0045103 IMP intermediate filament-based process
GO:0045109 IGI intermediate filament organization
GO:0045111 IEA intermediate filament cytoskeleton
GO:0060020 IMP Bergmann glial cell differentiation
GO:0060395 IDA SMAD protein signal transduction
GO:0070062 IEA extracellular vesicular exosome
GO:0070307 IDA lens fiber cell development
GO:0097110 IEA scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010008 vim protein_coding Danio_rerio
ENSDARG00000044501 viml protein_coding Danio_rerio
ENSG00000026025 VIM vimentin protein_coding Homo_sapiens

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