ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027200 Sema6d 10090 + 2:124089969-124667770 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051419 Sema6d-006 124610296-124665957 protein_coding
  ENSMUST00000076335 Sema6d-201 124610296-124667769 protein_coding
  ENSMUST00000077847 Sema6d-202 124610296-124667769 protein_coding
  ENSMUST00000078621 Sema6d-203 124610296-124667769 protein_coding
  ENSMUST00000103238 Sema6d-007 124653635-124665309 protein_coding
  ENSMUST00000103239 Sema6d-008 124610573-124667770 protein_coding
  ENSMUST00000103240 Sema6d-004 124610601-124665957 protein_coding
  ENSMUST00000103241 Sema6d-001 124089969-124667769 protein_coding
  ENSMUST00000132088 Sema6d-005 124610106-124662885 retained_intron
  ENSMUST00000137172 Sema6d-002 124089969-124143353 retained_intron
  ENSMUST00000151199 Sema6d-003 124143005-124507701 processed_transcript

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000076335ENSMUST00000077847ENSMUST00000078621ENSMUST00000103238ENSMUST00000103239ENSMUST00000103240ENSMUST00000103241
Transcript ID C166 Tie2+ EC mES
ENSMUST00000076335 N/A 11.934±1.32 1.977±0.00
ENSMUST00000077847 2.465±0.74 6.373±0.67 2.391±0.00
ENSMUST00000078621 N/A 4.429±0.19 N/A
ENSMUST00000103238 3.728±0.89 18.974±6.59 N/A
ENSMUST00000103239 5.649±1.70 14.180±5.13 N/A
ENSMUST00000103240 N/A 4.973±0.00 N/A
ENSMUST00000103241 N/A 11.581±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004NB CIL_0004NB_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0014911 IDA positive regulation of smooth muscle cell migration
GO:0014912 IDA negative regulation of smooth muscle cell migration
GO:0016021 IEA integral component of membrane
GO:0021591 IDA ventricular system development
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011533 sema6dl protein_coding Danio_rerio
ENSG00000137872 SEMA6D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein_coding Homo_sapiens

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