ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027304 Rtf1 10090 + 2:119675068-119735407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028767 Rtf1-001 119675068-119735407 protein_coding
  ENSMUST00000126984 Rtf1-004 119726684-119727652 retained_intron
  ENSMUST00000136321 Rtf1-002 119675072-119692221 processed_transcript
  ENSMUST00000149904 Rtf1-003 119710996-119712462 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000028767
Transcript ID C166 Tie2+ EC mES
ENSMUST00000028767 12.986±1.62 10.270±1.14 6.675±1.14

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0005FB CIL_0005FB_0002 CGP
CIL_0005FC CIL_0005FC_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001711 IMP endodermal cell fate commitment
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016055 IEA Wnt signaling pathway
GO:0016593 ISS Cdc73/Paf1 complex
GO:0019827 IMP stem cell maintenance
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0080182 IMP histone H3-K4 trimethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008947 rtf1 protein_coding Danio_rerio
ENSG00000137815 RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein_coding Homo_sapiens

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