ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028767 Rtf1-001 ENSMUSG00000027304 10090 + 2:119675068-119735407 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000028767
Transcript ID C166 Tie2+ EC mES
ENSMUST00000028767 12.986±1.62 10.270±1.14 6.675±1.14

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001711 IMP endodermal cell fate commitment
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016055 IEA Wnt signaling pathway
GO:0016593 ISS Cdc73/Paf1 complex
GO:0019827 IMP stem cell maintenance
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0080182 IMP histone H3-K4 trimethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389629 RTF1-001 protein_coding Homo_sapiens 0 3456
ENST00000462276 RTF1-002 processed_transcript Homo_sapiens 0 405
ENST00000473214 RTF1-003 retained_intron Homo_sapiens 0 614
ENST00000558117 RTF1-005 retained_intron Homo_sapiens 0 311
ENST00000558298 RTF1-004 processed_transcript Homo_sapiens 0 219
ENST00000560447 RTF1-007 protein_coding Homo_sapiens 0 682
ENST00000561076 RTF1-006 retained_intron Homo_sapiens 0 339

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