ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027411 Vps16 10090 + 2:130424339-130444269 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028900 Vps16-001 130424365-130444269 protein_coding
  ENSMUST00000125098 Vps16-008 130441608-130443399 retained_intron
  ENSMUST00000125973 Vps16-005 130424339-130438453 retained_intron
  ENSMUST00000128994 Vps16-003 130424365-130439917 protein_coding
  ENSMUST00000130258 Vps16-002 130424404-130440296 processed_transcript
  ENSMUST00000131220 Vps16-007 130439630-130441705 retained_intron
  ENSMUST00000132388 Vps16-004 130437636-130439067 retained_intron
  ENSMUST00000134677 Vps16-009 130443167-130443734 retained_intron
  ENSMUST00000137084 Vps16-006 130440322-130441307 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000028900ENSMUST00000125098ENSMUST00000134677
Transcript ID C166 Tie2+ EC mES
ENSMUST00000028900 21.006±0.96 6.700±4.81 16.256±5.81
ENSMUST00000125098 N/A 15.086±0.14 25.763±0.00
ENSMUST00000134677 N/A 21.711±1.73 52.679±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007SG CIL_0007SG_0002 VISTA
CIL_00006D CIL_00006D_0002 CGP
CIL_00012E CIL_00012E_0002 CGP
CIL_00006B CIL_00006B_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0005769 IDA early endosome
GO:0005770 IEA late endosome
GO:0005884 IDA actin filament
GO:0006886 IEA intracellular protein transport
GO:0030424 IEA axon
GO:0030897 IEA HOPS complex
GO:0043025 IEA neuronal cell body
GO:0046718 IMP viral entry into host cell
GO:0051015 IEA actin filament binding
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059902 vps16 protein_coding Danio_rerio
ENSG00000215305 VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) protein_coding Homo_sapiens

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