ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028639 Ybx1 10090 - 4:119277981-119294604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079644 Ybx1-001 119277981-119294604 protein_coding
  ENSMUST00000127737 Ybx1-004 119277990-119282792 protein_coding
  ENSMUST00000139897 Ybx1-003 119282273-119294490 processed_transcript
  ENSMUST00000142884 Ybx1-005 119285002-119294480 processed_transcript
  ENSMUST00000144992 Ybx1-006 119281143-119282186 processed_transcript
  ENSMUST00000145976 Ybx1-007 119278167-119279450 processed_transcript
  ENSMUST00000152733 Ybx1-002 119293624-119294500 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000079644ENSMUST00000127737
Transcript ID C166 Tie2+ EC mES
ENSMUST00000079644 188.560±27.13 170.978±79.69 200.868±31.34
ENSMUST00000127737 N/A 103.773±26.95 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008N2 CIL_0008N2_0002 VISTA
CIL_0008PM CIL_0008PM_0002 VISTA
CIL_0002SI CIL_0002SI_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IGI in utero embryonic development
GO:0003697 IDA single-stranded DNA binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IGI nucleus
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0030529 ISS ribonucleoprotein complex
GO:0031965 IEA nuclear membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0051154 IDA negative regulation of striated muscle cell differentiation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IEA extracellular vesicular exosome
GO:0070934 ISS CRD-mediated mRNA stabilization
GO:0070937 IEA CRD-mediated mRNA stability complex
GO:0071204 IDA histone pre-mRNA 3'end processing complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004757 ybx1 protein_coding Danio_rerio
ENSG00000065978 YBX1 Y box binding protein 1 protein_coding Homo_sapiens

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