ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079644 Ybx1-001 ENSMUSG00000028639 10090 - 4:119277981-119294604 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000079644
Transcript ID C166 Tie2+ EC mES
ENSMUST00000079644 188.560±27.13 170.978±79.69 200.868±31.34

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IGI in utero embryonic development
GO:0003697 IDA single-stranded DNA binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IGI nucleus
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0030529 ISS ribonucleoprotein complex
GO:0031965 IEA nuclear membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0051154 IDA negative regulation of striated muscle cell differentiation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IEA extracellular vesicular exosome
GO:0070934 ISS CRD-mediated mRNA stabilization
GO:0070937 IEA CRD-mediated mRNA stability complex
GO:0071204 IDA histone pre-mRNA 3'end processing complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000007699 YBX2-001 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000321358 YBX1-001 protein_coding Homo_sapiens 0 2399
ENST00000332220 YBX1-004 protein_coding Homo_sapiens 0 634
ENST00000436427 YBX1-002 protein_coding Homo_sapiens 0 1849
ENST00000442962 YBX1P6-001 processed_pseudogene Homo_sapiens 0 1136
ENST00000444752 YBX1P10-001 processed_pseudogene Homo_sapiens 0 1452
ENST00000445822 YBX1P1-001 processed_pseudogene Homo_sapiens 0 1480
ENST00000467957 YBX1-003 processed_transcript Homo_sapiens 0 885
ENST00000489612 YBX1P2-001 processed_pseudogene Homo_sapiens 0 1319
ENST00000509441 YBX1P5-001 processed_pseudogene Homo_sapiens 0 318
ENST00000560358 RP11-244F12.1-001 processed_pseudogene Homo_sapiens 0 1225
ENST00000570627 YBX2-005 processed_transcript Homo_sapiens 5e-19 99
ENST00000571834 YBX2-002 retained_intron Homo_sapiens 2e-18 99
ENST00000605472 RP11-451F14.1-001 processed_pseudogene Homo_sapiens 0 387
ENST00000616651 YBX1-201 protein_coding Homo_sapiens 0 2263

Loading