ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029625 Cpsf4 10090 + 5:145167213-145182041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070487 Cpsf4-001 145167224-145182041 protein_coding
  ENSMUST00000160422 Cpsf4-005 145167247-145182040 protein_coding
  ENSMUST00000160437 Cpsf4-006 145170543-145182041 retained_intron
  ENSMUST00000160574 Cpsf4-004 145167268-145181232 nonsense_mediated_decay
  ENSMUST00000160629 Cpsf4-002 145167213-145182041 protein_coding
  ENSMUST00000160762 Cpsf4-007 145167455-145181353 protein_coding
  ENSMUST00000162244 Cpsf4-003 145167254-145181753 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000160422ENSMUST00000160437ENSMUST00000160629ENSMUST00000162244
Transcript ID C166 Tie2+ EC mES
ENSMUST00000160422 2.540±0.91 2.379±0.29 1.566±0.00
ENSMUST00000160437 1.254±0.20 0.669±0.10 1.694±0.79
ENSMUST00000160629 8.483±0.99 4.499±1.28 3.519±1.63
ENSMUST00000162244 6.768±1.34 2.772±0.12 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004TL CIL_0004TL_0002 CGP
CIL_0004TM CIL_0004TM_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020217 cpsf4 protein_coding Danio_rerio
ENSG00000160917 CPSF4 cleavage and polyadenylation specific factor 4, 30kDa protein_coding Homo_sapiens

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