ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032245 Cln6 10090 + 9:62838785-62852006 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034776 Cln6-001 62838785-62852006 protein_coding
  ENSMUST00000124984 Cln6-004 62847033-62851162 protein_coding
  ENSMUST00000138276 Cln6-003 62846015-62850711 nonsense_mediated_decay
  ENSMUST00000141821 Cln6-002 62838792-62846018 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000034776
Transcript ID C166 Tie2+ EC mES
ENSMUST00000034776 25.272±1.58 3.733±2.27 13.345±5.21

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003W4 CIL_0003W4_0002 CGP
CIL_0008FO CIL_0008FO_0002 VISTA
CIL_00098T CIL_00098T_0002 VISTA
CIL_0004FC CIL_0004FC_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001573 ISS ganglioside metabolic process
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005783 ISS endoplasmic reticulum
GO:0005788 ISS endoplasmic reticulum lumen
GO:0007040 IMP lysosome organization
GO:0007042 ISS lysosomal lumen acidification
GO:0007601 IMP visual perception
GO:0008203 ISS cholesterol metabolic process
GO:0016020 IEA membrane
GO:0030203 ISS glycosaminoglycan metabolic process
GO:0031987 IMP locomotion involved in locomotory behavior
GO:0042803 ISS protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044265 IMP cellular macromolecule catabolic process
GO:0045862 ISS positive regulation of proteolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077584 cln6a protein_coding Danio_rerio
ENSDARG00000090002 cln6b protein_coding Danio_rerio
ENSG00000128973 CLN6 ceroid-lipofuscinosis, neuronal 6, late infantile, variant protein_coding Homo_sapiens

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