ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032612 Usp4 10090 + 9:108347853-108392545 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035237 Usp4-001 108347853-108392545 protein_coding
  ENSMUST00000192750 Usp4-007 108356454-108357940 processed_transcript
  ENSMUST00000193093 Usp4-003 108347897-108357825 retained_intron
  ENSMUST00000193288 Usp4-005 108372693-108392259 protein_coding
  ENSMUST00000194034 Usp4-008 108359844-108362862 retained_intron
  ENSMUST00000194065 Usp4-006 108367924-108370242 retained_intron
  ENSMUST00000194224 Usp4-002 108347874-108385903 nonsense_mediated_decay
  ENSMUST00000194939 Usp4-010 108390876-108392245 retained_intron
  ENSMUST00000194959 Usp4-004 108347913-108392520 protein_coding
  ENSMUST00000195608 Usp4-009 108381371-108391792 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000035237ENSMUST00000193288ENSMUST00000194224ENSMUST00000194939ENSMUST00000194959
Transcript ID C166 Tie2+ EC mES
ENSMUST00000035237 19.271±1.32 15.994±0.52 15.119±3.42
ENSMUST00000193288 N/A N/A 6.464±0.23
ENSMUST00000194224 N/A 2.612±0.09 N/A
ENSMUST00000194939 N/A 14.171±0.00 22.153±0.00
ENSMUST00000194959 4.123±0.85 9.259±3.78 2.403±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005886 IEA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 ISS protein deubiquitination
GO:0031397 ISS negative regulation of protein ubiquitination
GO:0031647 ISS regulation of protein stability
GO:0031685 IEA adenosine receptor binding
GO:0034394 ISS protein localization to cell surface
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014770 usp4 protein_coding Danio_rerio
ENSG00000114316 USP4 ubiquitin specific peptidase 4 (proto-oncogene) protein_coding Homo_sapiens

Loading