ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035478 Mbd3 10090 - 10:80392539-80399550 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092295 Mbd3-001 80392539-80399550 protein_coding
  ENSMUST00000105347 Mbd3-006 80392982-80395719 protein_coding
  ENSMUST00000105348 Mbd3-003 80392839-80399422 protein_coding
  ENSMUST00000105349 Mbd3-002 80392539-80399550 protein_coding
  ENSMUST00000125618 Mbd3-005 80393895-80395326 processed_transcript
  ENSMUST00000142997 Mbd3-004 80392539-80395170 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000092295ENSMUST00000105347ENSMUST00000105348ENSMUST00000105349ENSMUST00000142997
Transcript ID C166 Tie2+ EC mES
ENSMUST00000092295 10.720±1.07 10.373±6.43 9.898±0.27
ENSMUST00000105347 17.620±1.42 12.002±0.00 N/A
ENSMUST00000105348 N/A 8.504±0.00 N/A
ENSMUST00000105349 28.297±3.04 14.350±11.62 40.856±3.12
ENSMUST00000142997 17.786±2.24 5.182±2.36 28.873±5.43

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003YO CIL_0003YO_0002 CGP
CIL_0003Z8 CIL_0003Z8_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IDA chromatin
GO:0000790 IEA nuclear chromatin
GO:0000792 IDA heterochromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006346 IDA methylation-dependent chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0008327 ISS methyl-CpG binding
GO:0009888 IMP tissue development
GO:0016573 IMP histone acetylation
GO:0016581 IPI NuRD complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042029 mbd3b protein_coding Danio_rerio
ENSDARG00000061774 mbd3a protein_coding Danio_rerio
ENSG00000071655 MBD3 methyl-CpG binding domain protein 3 protein_coding Homo_sapiens

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