ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038290 Smg6 10090 + 11:74925823-75164448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045281 Smg6-001 74925823-75164448 protein_coding
  ENSMUST00000130145 Smg6-003 74930520-75164448 nonsense_mediated_decay
  ENSMUST00000135522 Smg6-002 74989361-74992206 retained_intron
  ENSMUST00000140197 Smg6-004 74993853-75139369 protein_coding
  ENSMUST00000142038 Smg6-005 75132435-75139369 processed_transcript
  ENSMUST00000153226 Smg6-006 75159633-75163182 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000045281ENSMUST00000130145
Transcript ID C166 Tie2+ EC mES
ENSMUST00000045281 11.982±2.26 8.904±0.34 10.046±1.53
ENSMUST00000130145 N/A 4.677±0.00 4.949±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007RP CIL_0007RP_0002 VISTA
CIL_00093G CIL_00093G_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000723 ISS telomere maintenance
GO:0000781 IEA chromosome, telomeric region
GO:0004521 ISS endoribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0035145 ISS exon-exon junction complex
GO:0042162 ISS telomeric DNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000070366 SMG6 SMG6 nonsense mediated mRNA decay factor protein_coding Homo_sapiens

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