ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045281 Smg6-001 ENSMUSG00000038290 10090 + 11:74925823-75164448 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000045281
Transcript ID C166 Tie2+ EC mES
ENSMUST00000045281 11.982±2.26 8.904±0.34 10.046±1.53

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000723 ISS telomere maintenance
GO:0000781 IEA chromosome, telomeric region
GO:0004521 ISS endoribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0035145 ISS exon-exon junction complex
GO:0042162 ISS telomeric DNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263073 SMG6-001 protein_coding Homo_sapiens 0 5603
ENST00000344595 SRR-001 protein_coding Homo_sapiens 3e-27 128
ENST00000354901 SMG6-002 protein_coding Homo_sapiens 0 2708
ENST00000536871 SMG6-005 protein_coding Homo_sapiens 0 2313
ENST00000570606 SMG6-021 protein_coding Homo_sapiens 0 492
ENST00000570659 SMG6-019 protein_coding Homo_sapiens 0 763
ENST00000570668 SMG6-013 protein_coding Homo_sapiens 0 475
ENST00000570756 SMG6-004 processed_transcript Homo_sapiens 0 1393
ENST00000570874 SMG6-011 retained_intron Homo_sapiens 0 542
ENST00000571442 SMG6-015 protein_coding Homo_sapiens 0 656
ENST00000572205 SMG6-018 protein_coding Homo_sapiens 0 564
ENST00000572369 SMG6-008 protein_coding Homo_sapiens 0 680
ENST00000573153 SMG6-012 processed_transcript Homo_sapiens 0 580
ENST00000573166 SMG6-003 processed_transcript Homo_sapiens 0 1703
ENST00000573827 SMG6-023 processed_transcript Homo_sapiens 0 699
ENST00000574501 SMG6-022 retained_intron Homo_sapiens 0 544
ENST00000575176 SMG6-009 protein_coding Homo_sapiens 0 601
ENST00000575338 SMG6-007 processed_transcript Homo_sapiens 0 379
ENST00000575454 SMG6-010 protein_coding Homo_sapiens 0 918
ENST00000575663 SMG6-014 protein_coding Homo_sapiens 0 649
ENST00000576218 SMG6-020 processed_transcript Homo_sapiens 0 1160
ENST00000619757 HIC1-006 protein_coding Homo_sapiens 0 544

Loading