ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105636 Prdm16-004 ENSMUSG00000039410 10090 - 4:154316125-154636866 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000105636
Transcript ID C166 Tie2+ EC mES
ENSMUST00000105636 0.018±0.01 0.244±0.00 0.006±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0022008 IDA neurogenesis
GO:0030512 IMP negative regulation of transforming growth factor beta receptor signaling pathway
GO:0035019 IDA somatic stem cell maintenance
GO:0043586 IMP tongue development
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086053 PRDM16-201 protein_coding Danio_rerio 0 529
ENSDART00000122737 PRDM16-001 protein_coding Danio_rerio 0 529
ENST00000270722 PRDM16-001 protein_coding Homo_sapiens 0 3903
ENST00000378389 PRDM16-005 processed_transcript Homo_sapiens 0 730
ENST00000378391 PRDM16-003 protein_coding Homo_sapiens 0 3923
ENST00000463591 PRDM16-004 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000509860 PRDM16-002 protein_coding Homo_sapiens 0 3175
ENST00000511072 PRDM16-007 protein_coding Homo_sapiens 0 4148
ENST00000512462 PRDM16-009 processed_transcript Homo_sapiens 0 3352
ENST00000514189 PRDM16-008 protein_coding Homo_sapiens 0 4095
ENST00000606170 PRDM16-011 retained_intron Homo_sapiens 0 261
ENST00000607632 PRDM16-010 retained_intron Homo_sapiens 0 597

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