ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056770 Setd3 10090 - 12:108106431-108179314 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071095 Setd3-001 108106431-108179314 protein_coding
  ENSMUST00000109879 Setd3-007 108116775-108179216 protein_coding
  ENSMUST00000125210 Setd3-006 108112130-108115083 processed_transcript
  ENSMUST00000125916 Setd3-005 108157984-108179213 protein_coding
  ENSMUST00000132682 Setd3-002 108107038-108179227 nonsense_mediated_decay
  ENSMUST00000147466 Setd3-003 108117034-108179263 nonsense_mediated_decay
  ENSMUST00000148119 Setd3-004 108106666-108114947 retained_intron
  ENSMUST00000169951 Setd3-008 108118297-108163009 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000071095ENSMUST00000132682ENSMUST00000148119
Transcript ID C166 Tie2+ EC mES
ENSMUST00000071095 18.784±4.39 13.948±5.79 13.035±2.97
ENSMUST00000132682 3.860±0.15 13.990±0.55 N/A
ENSMUST00000148119 N/A 1.127±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007KT CIL_0007KT_0002 UCNEbase
CIL_0005H1 CIL_0005H1_0002 CGP
CIL_0009CK CIL_0009CK_0002 VISTA
CIL_0003HD CIL_0003HD_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0003713 ISS transcription coactivator activity
GO:0006351 IEA transcription, DNA-templated
GO:0010452 ISS histone H3-K36 methylation
GO:0018022 IEA peptidyl-lysine methylation
GO:0018023 ISS peptidyl-lysine trimethylation
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)
GO:0051149 IMP positive regulation of muscle cell differentiation
GO:0051568 IDA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016513 setd3 protein_coding Danio_rerio
ENSG00000183576 SETD3 SET domain containing 3 protein_coding Homo_sapiens

Loading