ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002198 Sf3a1-003 ENSMUSG00000002129 10090 + 11:4160350-4182541 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000002198
Transcript ID C166 Tie2+ EC mES
ENSMUST00000002198 23.110±1.16 10.093±5.05 15.790±2.67

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005684 ISS U2-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215793 SF3A1-001 protein_coding Homo_sapiens 0 3208
ENST00000338306 CCDC157-201 protein_coding Homo_sapiens 1e-30 139
ENST00000399824 CCDC157-002 protein_coding Homo_sapiens 9e-31 139
ENST00000405659 CCDC157-001 protein_coding Homo_sapiens 1e-30 139
ENST00000411423 SF3A1-004 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000444440 SF3A1-011 protein_coding Homo_sapiens 0 603
ENST00000447376 SF3A1-009 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000463818 SF3A1-003 retained_intron Homo_sapiens 0 553
ENST00000471037 SF3A1-006 retained_intron Homo_sapiens 0 448
ENST00000471342 SF3A1-005 retained_intron Homo_sapiens 0 612
ENST00000485618 SF3A1-008 retained_intron Homo_sapiens 0 734
ENST00000496189 SF3A1-002 retained_intron Homo_sapiens 0 259
ENST00000498259 SF3A1-007 retained_intron Homo_sapiens 0 440

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