ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040019 Sox10-201 ENSMUSG00000033006 10090 - 15:79154913-79164490 protein_coding

Mus musculus Ensembl GRCm38

Genome
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000040019
Transcript ID C166 Tie2+ EC mES
ENSMUST00000040019 0.012±0.00 0.064±0.05 0.042±0.01

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001190 IGI RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IGI in utero embryonic development
GO:0001755 IMP neural crest cell migration
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007422 IGI peripheral nervous system development
GO:0008134 IEA transcription factor binding
GO:0014015 IMP positive regulation of gliogenesis
GO:0030154 IMP cell differentiation
GO:0030318 IMP melanocyte differentiation
GO:0031315 IDA extrinsic component of mitochondrial outer membrane
GO:0042802 IEA identical protein binding
GO:0043066 IMP negative regulation of apoptotic process
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048469 IGI cell maturation
GO:0048484 IMP enteric nervous system development
GO:0048546 IGI digestive tract morphogenesis
GO:0048589 IMP developmental growth
GO:0048709 IMP oligodendrocyte differentiation
GO:0048863 IEA stem cell differentiation
GO:0090090 IDA negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245479 SOX9-001 protein_coding Homo_sapiens 0 420
ENST00000272193 SOX13-004 processed_transcript Homo_sapiens 0.00000001 66
ENST00000340356 SOX18-001 protein_coding Homo_sapiens 0.000000000002 79
ENST00000360880 SOX10-001 protein_coding Homo_sapiens 0 2220
ENST00000367204 SOX13-002 protein_coding Homo_sapiens 0.00000003 66
ENST00000396884 SOX10-002 protein_coding Homo_sapiens 0 2346
ENST00000427770 SOX10-003 protein_coding Homo_sapiens 0 944
ENST00000446929 SOX10-004 protein_coding Homo_sapiens 0 636
ENST00000470555 SOX10-005 processed_transcript Homo_sapiens 2e-26 121
ENST00000525258 SOX13-009 retained_intron Homo_sapiens 0.000001 58
ENST00000618875 SOX13-201 protein_coding Homo_sapiens 0.00000003 66

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