ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: paired related homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239461 PRRX1-002 ENSG00000116132 9606 + 1:170663906-170739419 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECHMVEC-DHUVECENST00000239461
Transcript ID HAoEC HMVEC-D HUVEC
ENST00000239461 0.108±0.24 0.036±0.00 0.041±0.06

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0030326 IEA embryonic limb morphogenesis
GO:0042472 IEA inner ear morphogenesis
GO:0042474 IEA middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0048701 IEA embryonic cranial skeleton morphogenesis
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048844 IEA artery morphogenesis
GO:0051216 IEA cartilage development
GO:0060021 IEA palate development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027878 Prrx1-001 protein_coding Mus_musculus 0 1718
ENSMUST00000174397 Prrx1-004 protein_coding Mus_musculus 0 1090
ENSMUST00000075805 Prrx1-002 protein_coding Mus_musculus 0 1090
ENSMUST00000183691 Prrx1-005 processed_transcript Mus_musculus 0 632
ENSMUST00000174098 Prrx1-003 retained_intron Mus_musculus 0 595
ENSMUST00000108908 Scn8a-002 protein_coding Mus_musculus 6e-21 108
ENSMUST00000108909 Scn8a-001 protein_coding Mus_musculus 6e-21 108
ENSMUST00000108910 Scn8a-202 protein_coding Mus_musculus 6e-21 108
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 6e-21 108

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