ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info

Description: serine/arginine-rich splicing factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244020 SRSF6-001 ENSG00000124193 9606 + 20:43457928-43464247 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000244020
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000244020 5.922±2.03 9.083±3.80 25.722±0.00 11.020±8.48

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006376 IMP mRNA splice site selection
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010837 IMP regulation of keratinocyte proliferation
GO:0016607 IDA nuclear speck
GO:0031124 TAS mRNA 3'-end processing
GO:0036002 IDA pre-mRNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045617 IMP negative regulation of keratinocyte differentiation
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0060501 IDA positive regulation of epithelial cell proliferation involved in lung morphogenesis
GO:0060548 IDA negative regulation of cell death
GO:0061041 IMP regulation of wound healing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130411 Srsf6-001 protein_coding Mus_musculus 0 1554
ENSMUST00000193611 Srsf6-004 retained_intron Mus_musculus 0 1131
ENSMUST00000017065 Srsf6-002 nonsense_mediated_decay Mus_musculus 0 1129
ENSMUST00000126163 Srsf6-003 protein_coding Mus_musculus 0 387

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