ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: pre-mRNA processing factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324862 PRPF3-001 ENSG00000117360 9606 + 1:150321476-150353195 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000324862
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000324862 5.867±3.32 13.442±3.22 16.645±0.00 11.406±0.00 10.045±5.50

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 IDA spliceosomal tri-snRNP complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 NAS mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 NAS spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 TAS:IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0015030 IDA Cajal body
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015892 Prpf3-001 protein_coding Mus_musculus 0 3147
ENSMUST00000161476 Prpf3-002 protein_coding Mus_musculus 0 3003
ENSMUST00000160155 Prpf3-003 retained_intron Mus_musculus 0 1681
ENSMUST00000191215 Gm7933-001 processed_pseudogene Mus_musculus 0 946
ENSMUST00000161482 Prpf3-009 processed_transcript Mus_musculus 0 730
ENSMUST00000120923 Gm11809-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000161420 Prpf3-007 retained_intron Mus_musculus 0 617
ENSMUST00000160109 Prpf3-006 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000161073 Prpf3-005 retained_intron Mus_musculus 0 449
ENSMUST00000159901 Prpf3-010 protein_coding Mus_musculus 0 440
ENSMUST00000163059 Prpf3-008 retained_intron Mus_musculus 0 435

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