ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: high mobility group box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325307 HMGB3-001 ENSG00000029993 9606 + X:150983286-150990775 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000325307
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000325307 6.096±1.84 8.433±3.48 0.770±0.00 8.049±0.00 8.804±5.85

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006310 ISS DNA recombination
GO:0007275 TAS multicellular organismal development
GO:0008301 ISS DNA binding, bending
GO:0044822 IDA poly(A) RNA binding
GO:0045578 IEA negative regulation of B cell differentiation
GO:0045638 IEA negative regulation of myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 1903
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 1834
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 1744
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 1740
ENSMUST00000078030 Gm6104-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 806
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000195316 Gm8850-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 658
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000193850 Gm5979-001 unprocessed_pseudogene Mus_musculus 0 573
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117677 Gm13386-001 processed_pseudogene Mus_musculus 2e-30 139
ENSMUST00000192519 Stx6-010 processed_transcript Mus_musculus 0.00000000000008 84

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