ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: AT rich interactive domain 1B (SWI1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346085 ARID1B-001 ENSG00000049618 9606 + 6:156777929-157210779 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHUVECENST00000346085
Transcript ID BECs HAoEC HHSEC HUVEC
ENST00000346085 1.012±0.00 0.397±0.18 2.464±0.00 0.953±0.14

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0048096 NAS chromatin-mediated maintenance of transcription
GO:0071565 IEA nBAF complex
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092723 Arid1b-002 protein_coding Mus_musculus 0 6632
ENSMUST00000115797 Arid1b-201 protein_coding Mus_musculus 0 6017
ENSMUST00000115799 Arid1b-001 protein_coding Mus_musculus 0 6017
ENSMUST00000156775 Arid1b-004 retained_intron Mus_musculus 0 313
ENSMUST00000146703 Arid1b-003 retained_intron Mus_musculus 0 198
ENSMUST00000124362 Arid1b-005 processed_transcript Mus_musculus 5.60519e-45 189
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 2e-28 134
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 2e-28 134
ENSDART00000138818 arid1b-001 protein_coding Danio_rerio 0.000000002 71

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