ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: high mobility group box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448905 HMGB3-201 ENSG00000029993 9606 + X:150983406-150987932 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; HUVECENST00000448905
Transcript ID HUVEC
ENST00000448905 12.850±3.81

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006310 ISS DNA recombination
GO:0007275 TAS multicellular organismal development
GO:0008301 ISS DNA binding, bending
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 961
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 857
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 856
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 846
ENSMUST00000078030 Gm6104-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 808
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000195316 Gm8850-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 658
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000193850 Gm5979-001 unprocessed_pseudogene Mus_musculus 0 573
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117677 Gm13386-001 processed_pseudogene Mus_musculus 4e-31 139

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