ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029076 Sdf4 10090 + 4:155992872-156013610 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050078 Sdf4-001 155992911-156013610 protein_coding
  ENSMUST00000097734 Sdf4-004 155993170-156002699 protein_coding
  ENSMUST00000105578 Sdf4-003 155993377-156010318 protein_coding
  ENSMUST00000105579 Sdf4-002 155992872-156010210 protein_coding
  ENSMUST00000124872 Sdf4-005 155999448-156000985 retained_intron
  ENSMUST00000149971 Sdf4-006 156008510-156009857 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000050078ENSMUST00000105578ENSMUST00000105579
Transcript ID C166 Tie2+ EC mES
ENSMUST00000050078 4.226±0.29 4.756±2.21 2.193±0.17
ENSMUST00000105578 14.130±2.29 11.420±0.88 34.670±14.66
ENSMUST00000105579 44.460±6.37 60.287±38.47 21.387±1.92

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005770 ISS late endosome
GO:0005794 IEA Golgi apparatus
GO:0005796 IDA Golgi lumen
GO:0005886 IEA plasma membrane
GO:0009650 ISS UV protection
GO:0016020 IEA membrane
GO:0017156 IEA calcium ion-dependent exocytosis
GO:0021549 ISS cerebellum development
GO:0042802 IEA identical protein binding
GO:0045444 IEP fat cell differentiation
GO:0045471 ISS response to ethanol
GO:0070062 IEA extracellular vesicular exosome
GO:0070625 IEA zymogen granule exocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070682 sdf4 protein_coding Danio_rerio
ENSG00000078808 SDF4 stromal cell derived factor 4 protein_coding Homo_sapiens

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