ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389629 RTF1-001 ENSG00000137815 9606 + 15:41417104-41483563 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000389629
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000389629 4.088±0.93 13.976±6.94 9.263±0.00 12.211±0.00 8.316±4.64

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001711 ISS endodermal cell fate commitment
GO:0003677 IEA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016055 IEA Wnt signaling pathway
GO:0016570 IEA histone modification
GO:0016593 IDA Cdc73/Paf1 complex
GO:0019827 IDA stem cell maintenance
GO:0032968 IDA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051571 IEA positive regulation of histone H3-K4 methylation
GO:0080182 IEA histone H3-K4 trimethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028767 Rtf1-001 protein_coding Mus_musculus 0 3456
ENSDART00000130127 rtf1-001 protein_coding Danio_rerio 0 941
ENSMUST00000126984 Rtf1-004 retained_intron Mus_musculus 0 287
ENSMUST00000149904 Rtf1-003 retained_intron Mus_musculus 0 283
ENSMUST00000136321 Rtf1-002 processed_transcript Mus_musculus 0 263

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