ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050884 Hmgn1-001 ENSMUSG00000040681 10090 - 16:96120618-96127729 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000050884
Transcript ID C166 Tie2+ EC mES
ENSMUST00000050884 238.665±12.56 47.717±33.54 162.336±21.70

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000720 IMP pyrimidine dimer repair by nucleotide-excision repair
GO:0000785 IEA chromatin
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0006325 IMP chromatin organization
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0010224 IMP response to UV-B
GO:0010225 IDA response to UV-C
GO:0031492 IEA nucleosomal DNA binding
GO:0040034 IGI regulation of development, heterochronic
GO:0048597 IMP post-embryonic camera-type eye morphogenesis
GO:0050678 IMP regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288344 HMGN1-004 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000303758 HMGN1P35-001 processed_pseudogene Homo_sapiens 0 405
ENST00000380747 HMGN1-013 protein_coding Homo_sapiens 0 453
ENST00000380748 HMGN1-018 protein_coding Homo_sapiens 0 544
ENST00000380749 HMGN1-001 protein_coding Homo_sapiens 0 590
ENST00000419378 HMGN1-015 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000431390 HMGN1-002 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000436324 HMGN1-009 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000443046 HMGN1-017 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000482192 HMGN1-008 processed_transcript Homo_sapiens 0 460
ENST00000485550 HMGN1-021 processed_transcript Homo_sapiens 0 368
ENST00000486741 HMGN1-006 retained_intron Homo_sapiens 0 508
ENST00000489072 HMGN1-012 processed_transcript Homo_sapiens 0 466
ENST00000490032 HMGN1-010 processed_transcript Homo_sapiens 0 261
ENST00000492280 HMGN1-003 retained_intron Homo_sapiens 0 508
ENST00000495036 CPED1-002 processed_transcript Homo_sapiens 0 433
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 547

Loading