ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107938 Shank1-001 ENSMUSG00000038738 10090 + 7:44310253-44358351 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000107938
Transcript ID C166 Tie2+ EC mES
ENSMUST00000107938 0.024±0.01 0.028±0.02 0.036±0.01

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006461 ISS protein complex assembly
GO:0007616 IMP long-term memory
GO:0008022 ISS protein C-terminus binding
GO:0008306 IMP associative learning
GO:0008328 IDA ionotropic glutamate receptor complex
GO:0016020 IEA membrane
GO:0017124 ISS SH3 domain binding
GO:0017146 ISS N-methyl-D-aspartate selective glutamate receptor complex
GO:0030054 IEA cell junction
GO:0030159 IEA receptor signaling complex scaffold activity
GO:0030160 IMP GKAP/Homer scaffold activity
GO:0030425 IDA dendrite
GO:0030534 IEA adult behavior
GO:0031877 ISS somatostatin receptor binding
GO:0032232 IDA negative regulation of actin filament bundle assembly
GO:0032403 ISS protein complex binding
GO:0035176 IMP social behavior
GO:0035255 IPI ionotropic glutamate receptor binding
GO:0035418 IMP protein localization to synapse
GO:0042048 IMP olfactory behavior
GO:0042802 ISS identical protein binding
GO:0043005 IDA neuron projection
GO:0043197 IDA dendritic spine
GO:0045202 IEA synapse
GO:0045211 IDA postsynaptic membrane
GO:0046959 IMP habituation
GO:0050885 IMP neuromuscular process controlling balance
GO:0050894 IEA determination of affect
GO:0060013 IMP righting reflex
GO:0060074 ISS synapse maturation
GO:0060076 IDA excitatory synapse
GO:0060997 IMP dendritic spine morphogenesis
GO:0060999 ISS positive regulation of dendritic spine development
GO:0071532 ISS ankyrin repeat binding
GO:0071625 IMP vocalization behavior
GO:0097110 ISS scaffold protein binding
GO:0097481 IDA neuronal postsynaptic density
GO:2000311 IMP regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:2000463 IMP positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293441 SHANK1-001 protein_coding Homo_sapiens 0 6942
ENST00000359082 SHANK1-008 protein_coding Homo_sapiens 0 6656
ENST00000391813 SHANK1-003 protein_coding Homo_sapiens 0 4492
ENST00000391814 SHANK1-002 protein_coding Homo_sapiens 0 7110
ENST00000461154 SHANK1-005 retained_intron Homo_sapiens 8.99998e-41 171
ENST00000468654 SHANK1-006 nonsense_mediated_decay Homo_sapiens 0 547

Loading