ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: nucleolin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322723 NCL-001 ENSG00000115053 9606 - 2:231453531-231464594 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000322723
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000322723 38.270±19.04 114.125±46.16 13.075±0.00 86.846±0.00 43.255±43.00

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001525 IDA angiogenesis
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005938 IDA cell cortex
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042162 IDA telomeric DNA binding
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:1901838 IMP positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027438 Ncl-001 protein_coding Mus_musculus 0 2320
ENSMUST00000185676 Ncl-002 retained_intron Mus_musculus 0 1336
ENSMUST00000186435 Gm17837-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000186050 Ncl-005 retained_intron Mus_musculus 0 595
ENSMUST00000188682 Ncl-006 retained_intron Mus_musculus 0 505
ENSMUST00000185785 Ncl-003 protein_coding Mus_musculus 0 287
ENSMUST00000119030 Gm12020-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000189504 Ncl-004 retained_intron Mus_musculus 0 268
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.0003 53
ENSDART00000132181 armc9-001 protein_coding Danio_rerio 0.0000008 60
ENSDART00000139112 armc9-002 processed_transcript Danio_rerio 0.0000002 60
ENSDART00000125991 armc9-201 protein_coding Danio_rerio 0.0000006 60

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