ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: ubiquitin specific peptidase 4 (proto-oncogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351842 USP4-001 ENSG00000114316 9606 - 3:49277831-49340033 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000351842
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000351842 5.734±3.40 13.431±4.53 8.264±0.00 14.224±0.00 7.924±3.37

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 IMP spliceosomal tri-snRNP complex assembly
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IDA:IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 TAS lysosome
GO:0005886 IDA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0031397 IMP negative regulation of protein ubiquitination
GO:0031647 IDA regulation of protein stability
GO:0031685 IPI adenosine receptor binding
GO:0034394 IDA protein localization to cell surface
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042802 IPI identical protein binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000194959 Usp4-004 protein_coding Mus_musculus 0 3290
ENSMUST00000035237 Usp4-001 protein_coding Mus_musculus 0 2372
ENSMUST00000194224 Usp4-002 nonsense_mediated_decay Mus_musculus 0 1546
ENSMUST00000193288 Usp4-005 protein_coding Mus_musculus 0 1149
ENSMUST00000195608 Usp4-009 protein_coding Mus_musculus 0 531
ENSMUST00000194034 Usp4-008 retained_intron Mus_musculus 0 453
ENSMUST00000193093 Usp4-003 retained_intron Mus_musculus 0 425

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