ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: polypyrimidine tract binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011304 PTBP1 9606 + 19:797075-812327 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000349038 PTBP1-003 797425-812312 protein_coding
  ENST00000350092 PTBP1-019 799406-812222 protein_coding
  ENST00000356948 PTBP1-001 797075-812327 protein_coding
  ENST00000394601 PTBP1-002 797452-812312 protein_coding
  ENST00000585535 PTBP1-011 803577-808730 protein_coding
  ENST00000585856 PTBP1-007 807859-811021 retained_intron
  ENST00000585932 PTBP1-014 805096-811016 nonsense_mediated_decay
  ENST00000585956 PTBP1-016 804623-808646 protein_coding
  ENST00000586481 PTBP1-013 797427-804634 protein_coding
  ENST00000586944 PTBP1-004 797428-811289 retained_intron
  ENST00000587094 PTBP1-012 798428-804083 protein_coding
  ENST00000587136 PTBP1-008 804858-806660 retained_intron
  ENST00000587191 PTBP1-017 797490-808762 protein_coding
  ENST00000589575 PTBP1-006 797462-805017 protein_coding
  ENST00000589883 PTBP1-009 805508-807028 retained_intron
  ENST00000590887 PTBP1-005 797425-804582 retained_intron
  ENST00000592113 PTBP1-018 803575-806045 retained_intron
  ENST00000592804 PTBP1-010 804918-806036 retained_intron
  ENST00000621737 PTBP1-015 804389-810774 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000349038ENST00000350092ENST00000356948ENST00000394601ENST00000585956ENST00000586944ENST00000589575ENST00000590887
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000349038 16.163±0.00 57.856±25.11 29.809±0.00 34.724±0.00 44.825±27.15
ENST00000350092 N/A 11.073±0.80 N/A 35.679±0.00 37.125±9.54
ENST00000356948 N/A 4.305±0.00 N/A N/A 33.367±20.45
ENST00000394601 21.955±0.50 31.404±12.03 N/A 47.826±0.00 20.928±8.99
ENST00000585956 N/A 146.335±49.70 N/A N/A 62.729±58.11
ENST00000586944 N/A 3.397±0.00 N/A N/A 7.828±8.03
ENST00000589575 N/A 117.438±32.05 N/A N/A 14.901±0.00
ENST00000590887 N/A N/A N/A N/A 142.446±13.13

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008XG CIL_0008XG_0001 VISTA
CIL_00051Q CIL_00051Q_0001 CGP
CIL_00008B CIL_00008B_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 TAS nucleolus
GO:0006397 TAS:IEA mRNA processing
GO:0008187 TAS poly-pyrimidine tract binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0033119 IDA negative regulation of RNA splicing
GO:0036002 IDA pre-mRNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051148 IDA negative regulation of muscle cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019362 ptbp1a protein_coding Danio_rerio
ENSDARG00000031907 ptbp1b protein_coding Danio_rerio
ENSMUSG00000006498 Ptbp1 protein_coding Mus_musculus

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