ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015837 Sqstm1 10090 - 11:50199366-50210827 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015981 Sqstm1-002 50199366-50210791 protein_coding
  ENSMUST00000102774 Sqstm1-001 50200152-50210827 protein_coding
  ENSMUST00000131214 Sqstm1-007 50202312-50206100 retained_intron
  ENSMUST00000136936 Sqstm1-005 50200167-50202954 protein_coding
  ENSMUST00000143379 Sqstm1-004 50200611-50210765 protein_coding
  ENSMUST00000147846 Sqstm1-003 50202443-50203118 retained_intron
  ENSMUST00000154805 Sqstm1-006 50205679-50207319 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000015981ENSMUST00000102774ENSMUST00000136936
Transcript ID C166 Tie2+ EC mES
ENSMUST00000015981 N/A 6.180±0.00 9.922±5.99
ENSMUST00000102774 209.685±14.67 187.959±182.28 18.721±5.72
ENSMUST00000136936 N/A 22.571±5.03 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0002376 IEA immune system process
GO:0003712 TAS transcription cofactor activity
GO:0005080 ISS protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0005776 ISS autophagic vacuole
GO:0005783 IEA endoplasmic reticulum
GO:0006914 ISS autophagy
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0016234 IEA inclusion body
GO:0016235 IDA aggresome
GO:0016236 ISS macroautophagy
GO:0016239 IEA positive regulation of macroautophagy
GO:0016605 IEA PML body
GO:0019901 IEA protein kinase binding
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle
GO:0042169 ISS SH2 domain binding
GO:0042802 IDA identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0043122 ISS regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0051291 IEA protein heterooligomerization
GO:0070062 IEA extracellular vesicular exosome
GO:0070530 IDA K63-linked polyubiquitin binding
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075014 sqstm1 protein_coding Danio_rerio
ENSG00000161011 SQSTM1 sequestosome 1 protein_coding Homo_sapiens

Loading