ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148264 Rabgef1-003 ENSMUSG00000025340 10090 + 5:130171824-130210442 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166mESENSMUST00000148264
Transcript ID C166 mES
ENSMUST00000148264 6.907±0.32 0.856±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001933 IMP negative regulation of protein phosphorylation
GO:0002686 IMP negative regulation of leukocyte migration
GO:0003677 IEA DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0031982 IDA vesicle
GO:0033004 IMP negative regulation of mast cell activation
GO:0043305 IMP negative regulation of mast cell degranulation
GO:0046580 IMP negative regulation of Ras protein signal transduction
GO:0048261 IMP negative regulation of receptor-mediated endocytosis
GO:0050728 IMP negative regulation of inflammatory response
GO:0060368 IMP regulation of Fc receptor mediated stimulatory signaling pathway
GO:1900165 IMP negative regulation of interleukin-6 secretion
GO:1900235 IMP negative regulation of Kit signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284957 RABGEF1-001 protein_coding Homo_sapiens 0 944
ENST00000380828 RABGEF1-201 protein_coding Homo_sapiens 0 944
ENST00000411606 GS1-124K5.2-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 231
ENST00000428370 GS1-124K5.12-001 unprocessed_pseudogene Homo_sapiens 0 296
ENST00000437078 RABGEF1-202 protein_coding Homo_sapiens 0 440
ENST00000439720 RABGEF1-003 protein_coding Homo_sapiens 0 944
ENST00000442563 RABGEF1-005 protein_coding Homo_sapiens 0 226
ENST00000449786 AC005077.7-001 unprocessed_pseudogene Homo_sapiens 0 307
ENST00000450873 RABGEF1-002 protein_coding Homo_sapiens 0 944
ENST00000484547 RABGEF1-004 processed_transcript Homo_sapiens 0 483
ENST00000503687 KCTD7-004 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000510829 RABGEF1-203 protein_coding Homo_sapiens 0 438
ENST00000607882 RABGEF1-007 nonsense_mediated_decay Homo_sapiens 0 440

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